Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MARQVFDDKLLAVISGNSIGVLATIKHDGR-PQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYG--L-PPGMR----
2IAB Chain:A ((3-155))
TTPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGETFLVATP--AASPTGRNLSETGRVRLGIG--PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS---YLYFRISPRRVQAWREANELSGRELMRDGEWLVTD
General information:
TITO was launched using:
RESULT:
Template:
2IAB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36246 for 1000 contacts (-36.2/contact) +
2D Compatibility (PS) -15332 + (NN) -10258 + (LL) 420
1D Compatibility (HY) 1200 + (ID) 1400
Total energy: -61616.0 ( -61.62 by residue)
QMean score : 0.346
(partial model without unconserved sides chains):
PDB file :
Tito_2IAB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IAB-query.scw
PDB file :
Tito_Scwrl_2IAB.pdb
: