Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGLSDWELAAARAAIARG----LDEDLRYGPDVTTLATVPASATTTASLVTREAGVVAG---LDVALLTLNEVLGTNGYRVLDRVEDGARVPPGEALMTLEAQTRGLLTAERTMLNLVGHLSGIATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYLAVGALTHSVRVLDIGLDM |
3GNN Chain:B ((23-294)) | --------AAFDAAIARNVADALAEDVGSGDQ----------APRRARVIVREDAVLCGVPWFDAVVRAVDPSIEVDW-----RHREGDRMSADSTVCELRGPARALLTAERNALNFLQLLSGVASATRQYVDRIADTRARILDTRKTLPGLRLAQKYAVRVGGGA--------------------------------------VQIEVETLDQLRTALAHGARSVLLDNFTLDMMRDAVRVTEGRA---VLEVSGGVNFDTVRAIAETGVDRISIGALTKDVRATDYSM-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GNN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -109627 for 1714 contacts (-64.0/contact) +
2D Compatibility (PS) -24141 + (NN) -14423 + (LL) 4332
1D Compatibility (HY) -16000 + (ID) 4750
Total energy: -164609.0 ( -96.04 by residue)
QMean score : 0.602
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