Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAYKTVVVGTDGSDSSMRAVDRAAQIAGA-DAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGAKNVEER--PIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTT
3LOQ Chain:A ((19-163))
YFQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKL------GIDIDHYIDEMSEKAEEVLPEVAQKIEAAGIK-AEVIKPFPAGDPVVEIIKAS--ENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKHD
General information:
TITO was launched using:
RESULT:
Template:
3LOQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52603 for 1018 contacts (-51.7/contact) +
2D Compatibility (PS) -14409 + (NN) -2164 + (LL) 328
1D Compatibility (HY) -6400 + (ID) 1400
Total energy: -76648.0 ( -75.29 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_3LOQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LOQ-query.scw
PDB file :
Tito_Scwrl_3LOQ.pdb
: