Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTATLTKTLGSLDDFRGTLCVPGDPDYPRVRA--IWNGQV----AREPALIATCHDACDVRTVLRRAVDAGMVTAVRGGGHNVAGTALCD--GGVVIDLSAMRAVSLDPATGRVRVQGGATLADLDHATVP--FARVAPAGIVTTTGVGGLTLGGGVGWTTRRFGLSCDNLVAVRLVTAAGDYLSVDDERDPELMWGLRGGGG-NFGIVTEFEFATHPFGPVAVAGFVVYRL--DDGPAVLRGYRQFAAAAPEEVTTIVVLRHAPPAPWIPVDQRGKPVVMIGAVHTGSIQTGIEALR-PVKSLARPVADTVWPTPFLAHQAVLDAS--------N-P-AG--HRYYWKSDHLA-ELNDEAIDLLVEQTAQLSSPDSLIGIFQLGGAAARG-GERSCFPSRHAR-FMVNYATHWTEAREDDLHRQWTRDAIEALAPYG---LGTAYVNFTADDAP--------------MHVETLYSTTEFSRLVTLKNRLDPDNVFRNNHNIRPSA |
3VTE Chain:A ((23-513)) | ----------------KLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRK-SMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNIT--------TTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKK-TDCKEFSWIDTTIFYSGVVNFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEKYFG-KNFNRLVKVKTKVDPNNFFRNEQSIPPL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VTE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -241320 for 3755 contacts (-64.3/contact) +
2D Compatibility (PS) -47519 + (NN) -19847 + (LL) 1712
1D Compatibility (HY) -24800 + (ID) 4750
Total energy: -336524.0 ( -89.62 by residue)
QMean score : 0.592
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