Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIADEIQSGLACTGYPFACDHGGVLPDIYLLGKTLGGGAVPLSAMVADREIFGVVHPGEHGSTFGGNPLAAAIGTPVVSMVVWGECQARSAKLGAHLHQRLADLIGDGAVALRGLGWWADVDIERALAIGTDMSMRLADRGVLLKDTYG-AALRFAPPLVITAQEIDCAVRRFADALWEAGS
1VEF Chain:B ((222-387))
LILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEKAA---PYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVV------------
General information:
TITO was launched using:
RESULT:
Template:
1VEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92210 for 1132 contacts (-81.5/contact) +
2D Compatibility (PS) -17664 + (NN) -7070 + (LL) 1152
1D Compatibility (HY) -10800 + (ID) 3000
Total energy: -129592.0 ( -114.48 by residue)
QMean score : 0.102
(partial model without unconserved sides chains):
PDB file :
Tito_1VEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VEF-query.scw
PDB file :
Tito_Scwrl_1VEF.pdb
: