Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVTVYTKPACVQC-SATSKALDKQGIAYQKVDISLD----SEARDYVMALGYLQA-------------------------------------PVVVAGNDHWSGFRPDRIKALAGAALTA
1RW1 Chain:A ((1-114))
-TYVLYGIKAC-DTMKKARTWLDEHKVAYDFHDYKAVGIDREHLRRWCAEHGWQTVLNRAGTTFRKLDEAQKADLDEAKAIELMLAQPSMIKRPVLELGGRTLVGFKPDAYAAALA-----
General information:
TITO was launched using:
RESULT:
Template:
1RW1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31480 for 437 contacts (-72.0/contact) +
2D Compatibility (PS) -7950 + (NN) -2948 + (LL) 1060
1D Compatibility (HY) -3200 + (ID) 950
Total energy: -45468.0 ( -104.05 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_1RW1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RW1-query.scw
PDB file :
Tito_Scwrl_1RW1.pdb
: