Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSICDPALRNALRTLKLSGMLDTLDARLAQTRNGDLGHLEFLQALREDEIARRESAALTRRLRRAKFEAQATFEDFDFTANPKLPGAMLRDLAALRWLDAGESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGGHADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDL-YELISDRAITGKPLILTSNRAPNNWYGLFP---NPVVAESLLDRLINTSHQILMDGPSYRPRKRPGRTTS |
4M4W Chain:J ((159-309)) | --------------------------------------------------------------------------------------------------GKGKGLYLYGKFGVGKTFMLAAIANELAEKEYSSMIVYVPEFVRELKNS---QTLEEKLNMVKTTPVLMLDDIGAES---WVRDEVIGTVLQHRMSQQLPTFFSSNFSPDELKHHFTYSQ-EVKAARLMERILYLAAPIRLDGENRR---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4M4W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -66212 for 881 contacts (-75.2/contact) +
2D Compatibility (PS) -13982 + (NN) -3206 + (LL) 8284
1D Compatibility (HY) -9200 + (ID) 1550
Total energy: -85866.0 ( -97.46 by residue)
QMean score : 0.306
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