Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSDPHHPHIQTHNAWVEFPIFDAKSRSLKKAVLGKAGGTIGRNNSNVVVIEALRDITMELNLGDRVGLVGHNGAGKSTLLRLLSGIYEPTRGWAKVTGRVAPV-------FDLGIGMD--------PEISGYENIIIRGLFLGQTRKQMQAKVDEIAEFTELG-EYLSMPLRTYSTGMRVRLAMGVVTSIDPEILLLDEGIGAVDADFLRKAQSRLQNLVE-RSGILVFASHSNEFLARLCKTAIWIDHGVIRLAGGIEEVVRAYEGEDAARHVREVLAETQADRQNVQG |
4MKI Chain:B ((5-238)) | ------MPIKVENVSFIYNEGT------------------------PYATVALKDINFSIDDEEFVGIIGHTGSGKSTLIQQLNGLLKPSKGKIYINGIDITDKKVSLKDIRKQVGLVFQYPEYQLFEETVFKDIAFGPSNLGLSEEEVKERVYEAMEIVGISKELADKSPFELSGGQKRRVAIAGILAMRPKILILDEPTAGLDPKGKQEILNKIKEIHDKYKMITILVSHNMEDIARIADKIIVMNRGKIELIGTPREVFRE-------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4MKI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -140263 for 1710 contacts (-82.0/contact) +
2D Compatibility (PS) -22912 + (NN) -7433 + (LL) 2744
1D Compatibility (HY) -8400 + (ID) 2750
Total energy: -179014.0 ( -104.69 by residue)
QMean score : 0.463
|
|
|