Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN
5E4W Chain:A ((4-103))
---------IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ-LKEFLD------
General information:
TITO was launched using:
RESULT:
Template:
5E4W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61206 for 704 contacts (-86.9/contact) +
2D Compatibility (PS) -10728 + (NN) -3623 + (LL) 928
1D Compatibility (HY) -11600 + (ID) 2750
Total energy: -88979.0 ( -126.39 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_5E4W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5E4W-query.scw
PDB file :
Tito_Scwrl_5E4W.pdb
: