Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRKSLVALL--LLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPH----LIYPGDTLSLVYVDGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYARGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQE----VRLGDRLFPTEERAVNSTFMPGEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKLSYALVLMASRPLSVTDRVQNP |
4QCC Chain:A ((5-274)) | TKLPLIAILRGITPDEALAHVGAVIDAG-------------FD----AVEIPLNSPQWEQSIPAIVDAYGDKALIGAGTVL-------KPEQVDALARMGCQLIVTPNIHSEVIRRAVGYGM--------------------------------TVCPGCATATEAFTALEAGAQALKIFPSSAF-----GPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLYR-----------AGQSVERTAQQAAAFVKAYREAQKQK--EQRQDQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLS-------DQEIEQTLQAFEA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QCC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -14677 for 1971 contacts (-7.4/contact) +
2D Compatibility (PS) -27244 + (NN) -1146 + (LL) 5780
1D Compatibility (HY) -5200 + (ID) 2450
Total energy: -44937.0 ( -22.80 by residue)
QMean score : 0.108
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