Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRVNKTVLVLVALVALVLGLTVHKVLTAQRQADPTVLLDAGIVILPQTRKVPALEFTNQDGQAVSTASLKGRWHLLFFGYTFCPDVCPTTLAQLRELQGKLPQEVRDDLQVVFVSVDPNRDTPQQIKQYLGYFNAGFQGLTGTPENIQKLANAMSIPYIPADTSKPNYTVDHSGNLVIIGPDGEQHGFIR--APLNNAKLEAQLPGVLKPQA
1JFU Chain:A ((5-180))
--TGDPACRAAVATAQKIAPLAHGEV--------------AALTMASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWC-VPCRKEMPALDELQGKLSGP---NFEVVAINIDT--RDPEKPKTFLKEANLTRLGYFNDQKA--KVFQDLK----------AIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG---
General information:
TITO was launched using:
RESULT:
Template:
1JFU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122666 for 1438 contacts (-85.3/contact) +
2D Compatibility (PS) -18846 + (NN) -10600 + (LL) 2340
1D Compatibility (HY) -3600 + (ID) 1850
Total energy: -155222.0 ( -107.94 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_1JFU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JFU-query.scw
PDB file :
Tito_Scwrl_1JFU.pdb
: