Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVLIVYAHPEPRSLNGALKDFAVARLEAAGHAVQVSDLYAMGWKA-VLDAGDSLEREASERFDPSATSLRAFENGWQSVDIAGEQDKLRWADTLILQFPLWWFSMPAILKGWIDRVYACGFAYGVGEHSDSHWGDRYGEGRMQGKRAMLVVTAGGWESHYAARGINGPMDDLLFPIHHGILHYPGFEVLPPFVVYRSGRIDAERFAALSEQLGRRLDDLQRAAPIPFRRQNGGDYLIPALTLRDELAPQRAGFAMHLAE
2QX9 Chain:B ((4-221))
-KVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDS--------GLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ------------------------
General information:
TITO was launched using:
RESULT:
Template:
2QX9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140508 for 1656 contacts (-84.8/contact) +
2D Compatibility (PS) -23748 + (NN) -10367 + (LL) 1644
1D Compatibility (HY) -17600 + (ID) 4600
Total energy: -195179.0 ( -117.86 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_2QX9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QX9-query.scw
PDB file :
Tito_Scwrl_2QX9.pdb
: