Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLKGKTALVTGSTSGIGLGIALSLAEAGADLLLNGFGEVDAALAQVRA-----RGVRAEHHPADLSSPEQIGELMAFAERTFGGVDILVNNAGIQYVAPVQEFPTERWDAIIAINLSSVFHTTRLALPGMLARGWGRIVNIASTHGLVASAGKSAYVAAKHGVLGLTKSVALETARTPVTCNAICPGWVLTPLVQKQIDARTAEGVSPEQAEHDLLAEKQPSLAFVTPEQLGGLTLFLCSEAADQVRGAAWNMDGGWVAQ
2ZTM Chain:C ((2-260))
--LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA-AEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRSPLVEKQISALAEK---------ELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGWTAR
General information:
TITO was launched using:
RESULT:
Template:
2ZTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156261 for 2108 contacts (-74.1/contact) +
2D Compatibility (PS) -26022 + (NN) -6521 + (LL) 552
1D Compatibility (HY) -22000 + (ID) 7650
Total energy: -217902.0 ( -103.37 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_2ZTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZTM-query.scw
PDB file :
Tito_Scwrl_2ZTM.pdb
: