Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MLGTRLKAARIRAGYSQKQLGMLVGMDEFSASAR-MNQYERERHSPNMRTSEQLAMVLQVPMAYLYCPEDELAELILK--------VSSLTPEFKKELTRFIEQLLAAQGST-SRQPVRTRSEL----------------------------------------------------
1Y9Q Chain:A ((4-181))
TDVMFKSQIANQLKNLRKSRGLSLDATAQLTGV-----SKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQLLSSERSFPDDLNMKIHTLFPYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQWHELQQGEHIRFFSDQPHGYAAVTEKAVFQNIVAYPR
General information:
TITO was launched using:
RESULT:
Template:
1Y9Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34820 for 700 contacts (-49.7/contact) +
2D Compatibility (PS) -11473 + (NN) -2012 + (LL) 276
1D Compatibility (HY) -1200 + (ID) 1150
Total energy: -50379.0 ( -71.97 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_1Y9Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y9Q-query.scw
PDB file :
Tito_Scwrl_1Y9Q.pdb
: