Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRALLLSGCLALVLLTQQAAAQTLLVVGDSISAALGLD-------TSQGWVALLQKRLADEGYDYRVVNASISGDTSAGGLARLPALLAEEKPALV--VIELGGNDGLRGM----APAQLQQNLASMAQKARAEGAKVLLLGIQLPPNY----------------GPRYIEAFSRVYGAVAAQEKTALVPFFLEGVG---GVQGMMQADGIHPALAAQPRLLENVWPTLKPLL
3MIL Chain:A ((2-210))
-------------------DYEKFLLFGDSITEFAFNTRPIEDGKDQYALGAALVNEYT---RKMDILQRGFKGYTSRWALKILPEILK-HESNIVMATIFLGANDACSAGPQSVPLPEFIDNIRQMVSLMKSYHIRPIIIGPGLVDREKWEKEKSEEIALGYFRTNENFAIYSDALAKLANEEKVPFVALNKAFQQEGGDAWQQLLTDGLHFSGKGYKIFHDELLKVIETF-
General information:
TITO was launched using:
RESULT:
Template:
3MIL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84213 for 1401 contacts (-60.1/contact) +
2D Compatibility (PS) -19732 + (NN) -9907 + (LL) 2448
1D Compatibility (HY) -9200 + (ID) 1600
Total energy: -122204.0 ( -87.23 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_3MIL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MIL-query.scw
PDB file :
Tito_Scwrl_3MIL.pdb
: