Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEPFRNIGIIGRLGSTQVLDTIRRLKKFLIDRHLHVILEDTIAEVLPGHGLQTCSRKIMGEICDLVVVVGGDGSMLGAARALARHKVPVLGINRGSLGFLTDIRPDELEAKVGEVLDGQYIVESRFLLDAQVRRGIDSMGQGDALNDVVLHPGKSTRMIEFELYIDGQFVCSQKADGLIVATPTGSTAYALSAGGPIMHPKLDAIVIVPMYPHMLSSRPIVVDGNSELKIVVSPNMQIYPQVSCDGQNHFTCAPGDTVTISKKPQKLRLIHPIDHNYYEICRTKLGWGSRLGGGD
1SUW Chain:A ((1-249))
----MRAAVVYKTD-----GHVKRIEEALKRLEVEVELFN--------------QPSEELENFDFIVSVGGDGTILRILQKL-KRCPPIFGINTGRVGLLTHASPENFEVELKKAVEK-FEVERFPRVSCSAMP------DVLALNEIAVLSRKPAKMIDVALRVDGVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPYVVSMERKIEVIAEK-----AIVVADGQKSVDFD--GEITIEKSEFPAVFFK--NEKRFRNLFGKVRSIG------
General information:
TITO was launched using:
RESULT:
Template:
1SUW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163567 for 2059 contacts (-79.4/contact) +
2D Compatibility (PS) -27560 + (NN) -10459 + (LL) 1860
1D Compatibility (HY) -15600 + (ID) 3350
Total energy: -218676.0 ( -106.20 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_1SUW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SUW-query.scw
PDB file :
Tito_Scwrl_1SUW.pdb
: