Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKTRKDVCVPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQRPADEVSALMELFLVALRREVRKLDENGIRLRIIGDRTRFHPELQAAMREAEAATAGNTRFLLQVAANYGGQWDIVQAAQRLAREVQGGHLAADDISAELLQGCLVTGDQPLPDLCIRTGGEHRISNFLLWQLAYAELYFSDLFWPDFKHAAMRAALADFSKRQRRFGKTSEQVEAEARPSC
4ONC Chain:B ((55-283))
---------LPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFGS-------------
General information:
TITO was launched using:
RESULT:
Template:
4ONC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146646 for 1822 contacts (-80.5/contact) +
2D Compatibility (PS) -25266 + (NN) -16435 + (LL) 1688
1D Compatibility (HY) -15200 + (ID) 4600
Total energy: -206459.0 ( -113.31 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_4ONC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ONC-query.scw
PDB file :
Tito_Scwrl_4ONC.pdb
: