Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLLPLAVLAALSSVHVASAQAADVSAAVGATGQSGMTYRLGLSWDWDKSWWQTSTGRLTGYWDAGY-TYWEGGDEGAGKHSLSFAPVFVYEFAGDSIKPFIEAGIGVAAFSGTRVGDQNLGSSLNFEDRIGAGLKFANGQSVGVRAIHYSNAGLKQPNDGIESYSLFYKIPI
1ZPS Chain:A ((8-131))
VNILLNFRHNINGEDLIIAVAQDHE-------TGEVLMVAYMN-----REALRRTLETGTAHYWSTSRGKLWLKGESS--GHVQRVKDVLV-DCDGDAVVLKVEQ-EGGACHTGYR----------------------------SCFYRSIDGDELKVREDAVKVFDP------
General information:
TITO was launched using:
RESULT:
Template:
1ZPS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18330 for 873 contacts (-21.0/contact) +
2D Compatibility (PS) -12618 + (NN) 1777 + (LL) 2288
1D Compatibility (HY) -4400 + (ID) 1300
Total energy: -32583.0 ( -37.32 by residue)
QMean score : 0.169
(partial model without unconserved sides chains):
PDB file :
Tito_1ZPS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZPS-query.scw
PDB file :
Tito_Scwrl_1ZPS.pdb
: