Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQGRVRDLRWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
1RU2 Chain:A ((4-151))
-----YIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPP------PDYLNAAVALETSLAPEELLNHTQRIELQQG-----RGGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK----
General information:
TITO was launched using:
RESULT:
Template:
1RU2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115665 for 1080 contacts (-107.1/contact) +
2D Compatibility (PS) -15183 + (NN) -8530 + (LL) 1376
1D Compatibility (HY) -15600 + (ID) 3500
Total energy: -157102.0 ( -145.46 by residue)
QMean score : 0.690
(partial model without unconserved sides chains):
PDB file :
Tito_1RU2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RU2-query.scw
PDB file :
Tito_Scwrl_1RU2.pdb
: