Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEAASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESSIFDAISSNQQPSPVLVSPSKRQRVAR
2VP4 Chain:B ((12-209))
-----------TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADL-----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107628 for 1544 contacts (-69.7/contact) +
2D Compatibility (PS) -21761 + (NN) -13317 + (LL) 3136
1D Compatibility (HY) -30000 + (ID) 9900
Total energy: -179470.0 ( -116.24 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_2VP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VP4-query.scw
PDB file :
Tito_Scwrl_2VP4.pdb
: