Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEEPVEKKWRIKRSAARFLAVQVAYSNIF--------MGYDKSTFELENCGLRNYVGKLADIFECEEFDYQFLEKLLYKVIRSGGEYDKIIEYYLHPSWSLLRLNLVSLSILRVAVCELANCDTPAPVVINEYTNIASDLLDKPSEIGFINGLLDKAKSAVKLNKNS
1Q8C Chain:A ((12-151))
-----------LTRTQRRIAVVEFIFSLLFFLPKEAEVIQADFLEYDTKERQLNEWQKLIVKAFS--ENIFSFQKKIEEQQLKNQLEIQT-------------KIDLLTTAVVLCALSEQKAHNTDKPLLISEALLIMDHYSQGAEK-KQTHALLDKLL---------
General information:
TITO was launched using:
RESULT:
Template:
1Q8C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64228 for 875 contacts (-73.4/contact) +
2D Compatibility (PS) -13153 + (NN) -5957 + (LL) 3076
1D Compatibility (HY) -5200 + (ID) 1200
Total energy: -86662.0 ( -99.04 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_1Q8C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q8C-query.scw
PDB file :
Tito_Scwrl_1Q8C.pdb
: