Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISVDGELRTRKYE-KDGQTHYITEVLASSFQLLESRSQRAMRENNISGDLSDLVLEEEELPF
1KAW Chain:A ((3-112))
RGVNKVILVGNLGQDPEVRY----MAVANITLATSE-------SEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNV-----------------GGTMQML---------
General information:
TITO was launched using:
RESULT:
Template:
1KAW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32043 for 625 contacts (-51.3/contact) +
2D Compatibility (PS) -10306 + (NN) -4031 + (LL) 2256
1D Compatibility (HY) -7200 + (ID) 1750
Total energy: -53074.0 ( -84.92 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_1KAW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KAW-query.scw
PDB file :
Tito_Scwrl_1KAW.pdb
: