Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIWTNLGRFAFIETEHVNLRPVAYTDREAFWRIASKRTNLQFIFPVQTSKKESDFLLVHSFMKEPLGVWAIEDKVSHKMFGVIRFENIDLSKKTAEIGYFLKESSWGQGIMTECLKTLSFFAFQEFGMDKLIIVTHKENIASQKVALKAHFKQSRSFKGSDRYTRRIRDYIEFQLTRGDYRYE
3FBU Chain:A ((1-168))
----------MFIKAERLLIRKFEFKDWEAVHEYTSDSDVMKYIPEGVFTEEDTRNFVNKN---MGAKNFPVILIGENILVGHIVFHKYF-GEHTYEIGWVFNPKYFNKGYASEAAQATLKYGFKEMKLHRIIATCQPENTPSYRVMEKIGMRREGYFKKCIPHGNEWWDEYYYAILEEE----
General information:
TITO was launched using:
RESULT:
Template:
3FBU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88648 for 1253 contacts (-70.7/contact) +
2D Compatibility (PS) -17867 + (NN) -5126 + (LL) 1668
1D Compatibility (HY) -7600 + (ID) 1450
Total energy: -119023.0 ( -94.99 by residue)
QMean score : 0.389
(partial model without unconserved sides chains):
PDB file :
Tito_3FBU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FBU-query.scw
PDB file :
Tito_Scwrl_3FBU.pdb
: