Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADVKVVNNEDSRGQKQDLKAKLFHIKIGSVPLPVYVCLALLILLA----GFLQKLPVNMLGGFAVILTMGWFLGTIGASIPGFKNFGGPAILSLLVPSILVFFNLINKNVLES-------TNMLMKQANFLYFYIACLVSGSILGMNRKMLIQGLLRMIFPMLLGMVCAMMVGTFVGVILGLEWRHTLFYIVTPVLAGGIGEGILPLSLGYSSITGVASEQLVAQLIPATIIGNFFAILCTALLNRLGEKKPHLSGQGQLVRLNKGEDMSDII-ADHSGPIDVKKMGGGVLTACSLFIFGHLLQQLTGFPGPV---LMIVAAAILKYINV-----IPRETQNGAKQLYKFISGNFTFPLMAGLGLLY------IPLKDVVATLSIQYFIVVISVVFTVISVGFF-VSRFLNMNPVEAGIISACQSGMGGTGDVAILSTADRMNLMPFAQVATRLGGAITVITMTAILRMLF--------------------- |
| 4EPQ Chain:A ((34-472)) | --DYQFPLPQKNSELWIIQKKTLQDLSSGKQKLDSFQSLESILEILRDSKNQNDEKYFNLKAVFEQL-----------------DKEEQTYFLEQFIPKICQLVLKIKKKQLKNQIPKESKIYEAAFSREEISYYVSCMFLCILKDQDRK--IYKDFRLIYLKDLV----------QQINIRRQEKIKCFYEYLKQALD------------FS--EKESKEVVIFQRINCGQLEDYENWVDKLKAIKL--KNVQLTD-DKLIEDFPGTLQVDFANCDIGGGILGNGL---VQEEIRFCVCPEMLVSLLVFDQSMEANEVIIMKGIKQYSDYQGYSNSFRFVKMGNSKIQKQKRTN-PQTILAIDALCFNSSDNQFSEVNVSRELNKSYMGFKQEDQLKTISTGKWGCGAFLGVFDLKFAIQWIASSRSNK--KMIICTFQDEQTTKQIQQVFDLYKQKNASIFLKLVMDYPNSKYMEDYTLLEYLIELGKEKA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4EPQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -345615 for 3221 contacts (-107.3/contact) +
2D Compatibility (PS) -40139 + (NN) 2328 + (LL) 2644
1D Compatibility (HY) -11600 + (ID) 3250
Total energy: -395632.0 ( -122.83 by residue)
QMean score : 0.210
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