Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--------------------------------------------------MKRITINIITMFIAAAVISLTGTAEAAEKQQQSPANVTLTDQQKKEIEQLEAEILKKRKDVISKYVQYGILPKER---GEHIKN-HLDKHFEMMKQNGFVPKHHPHPHKFEKRH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4HU8 Chain:A ((3-452))NEITLTIGQQKDLASMVPAKFAGQELSWTSSDPETASVTDKGIVTALKFSSGGANLFLKAPATGEAIITVTA------GKQSHSVKVITTVKGKEDIEKL-----PPLKDHFKDYFLIGNIFNNRDVSGSMMDNDWLAHHYA-----ILTPENHMKPSNLTNNRNETTGEITYTFSTADRMVNAAIAEGLKIHGHTLLWHQQIPPWQRSMESAAKDAALSVMKKYITEVMTHYKGKIYSWDVLNEIFPDGRGDNWTTAMRPENPWFKSIGSDFVYEAYLAARQADPNAILYYNDYNMDQAGKAALIAAMVRDVNAKYKQAYPRETRLLIEGIGMQSHHNMDVPASNIRNTINRYRELGVKISVSELDILCMGWSAFRGSTGQGADKDDMTIATNRNILDQAYKFNEYMKLYLENSDIIERVSMWGVSDRYSWRSGGLPLLFDADNKAKPAYYSFVRAREDYEAAKA


General information:
TITO was launched using:
RESULT:

Template: 4HU8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 196 -429 -2.19 -4.56
target 2D structure prediction score : 0.22
Monomeric hydrophicity matching model chain A : 0.56

3D Compatibility (PKB) : -2.19
2D Compatibility (Sec. Struct. Predict.) : 0.22
1D Compatibility (Hydrophobicity) : 0.56
QMean score : 0.229

(partial model without unconserved sides chains):
PDB file : Tito_4HU8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4HU8-query.scw
PDB file : Tito_Scwrl_4HU8.pdb: