Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPPITITRLDLQRLERLLDGLDEFGPAAEALEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSGKEYTLTLVYPE--DVAGEGKVSILAPVGTALLGLTIGQTIDWPAPSGKTLKLTLLEIEYQPEAAGDYAR
2DB2 Chain:A ((51-169))
GSSGSSGASR----------DLLKEFPQPKNLLNSVIGRA--LGISHAKDKLVYVHTN-----GPKKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGWGLLGPRNELFDAAKYRVLADRFGSGPSSG
General information:
TITO was launched using:
RESULT:
Template:
2DB2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15192 for 805 contacts (-18.9/contact) +
2D Compatibility (PS) -12593 + (NN) -7776 + (LL) 2092
1D Compatibility (HY) -2800 + (ID) 1150
Total energy: -37419.0 ( -46.48 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_2DB2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DB2-query.scw
PDB file :
Tito_Scwrl_2DB2.pdb
: