Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTLLLLLLVLLELGEAQGSLHRVPLRRHPSLKKKLRARSQLSEFWKSHNLDMIQFTESCSMDQSAKEPLINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSV--YCTSP-------ACKTHSRFQPSQSSTYSQPGQSFSIQYGTGS-LSGIIGADQVSAFATQVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGG-VTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGGTVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPV-----DGEYAVECANLNVMPDVTFTI-NGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAVP |
| 3PVK Chain:A ((3-331)) | -----------------------------------------------------------------VPVTLHNE-QVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGDGSSSQGTLYKDTVG-----FGGVSIKNQVLADVDSTS-------IDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDA--ATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTI-NTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDCNL---SGDVVFNFSKNAKISVPASEFAAS-------KCQLLFDVND-------ANILGDNFLRSAYIVYDLDDNEISLAQVK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PVK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195451 for 2571 contacts (-76.0/contact) +
2D Compatibility (PS) -33108 + (NN) -17340 + (LL) 6712
1D Compatibility (HY) -17600 + (ID) 4700
Total energy: -261487.0 ( -101.71 by residue)
QMean score : 0.326
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