Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIISVEGDLVVIRSESTFKNTEISFKLGVEFDEITPDDRKVKSIITLDGGVLVHVQKWDGKSTTIKKRRDGDKLVVECVMKGVTSTRVYERA
3PPT Chain:A ((1-130))
-AADLAGKWILESSENFDDYMKAVGVGMVMRKMANAATPTQEIKIDGDSWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQDQKG-SPDSILSREVKDGKMHMILKVNDVVCTRIYKRV
General information:
TITO was launched using:
RESULT:
Template:
3PPT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38792 for 950 contacts (-40.8/contact) +
2D Compatibility (PS) -14875 + (NN) -5622 + (LL) 132
1D Compatibility (HY) -6400 + (ID) 2650
Total energy: -68207.0 ( -71.80 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_3PPT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PPT-query.scw
PDB file :
Tito_Scwrl_3PPT.pdb
: