Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLLLLAASIMAFGSIQVQGNIAQFGEMIRLKT-GKRAELSYAFYGCHCGLGGKGSPKDATDRCCVTHDCCYKSLEKSGCGTKLLKYKYSHQGGQITCSANQNSCQKRLCQCDKAAAECFARNKKTYSLKYQFYPNM-FCKGKKPKC
3V9M Chain:A ((1-118))
---------------------NLIQFGNMIQCANKGSRPSLDYADYGCYCGWGGSGTPVDELDRCCQVHDNCYEQAGKKGCFPKLTLYSWKCTGNVPTC-NSKPGCKSFVCACDAAAAKCFAKA--PYKKENYNIDTKKRCK------
General information:
TITO was launched using:
RESULT:
Template:
3V9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35999 for 903 contacts (-39.9/contact) +
2D Compatibility (PS) -12407 + (NN) -4394 + (LL) 2416
1D Compatibility (HY) -7200 + (ID) 2550
Total energy: -60134.0 ( -66.59 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_3V9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V9M-query.scw
PDB file :
Tito_Scwrl_3V9M.pdb
: