Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPGCMSCKCVLS
1GNQ Chain:A ((1-166))
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1GNQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93594 for 1343 contacts (-69.7/contact) +
2D Compatibility (PS) -17809 + (NN) -4656 + (LL) 488
1D Compatibility (HY) -23200 + (ID) 8300
Total energy: -147071.0 ( -109.51 by residue)
QMean score : 0.650
(partial model without unconserved sides chains):
PDB file :
Tito_1GNQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GNQ-query.scw
PDB file :
Tito_Scwrl_1GNQ.pdb
: