Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPT---FDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLD---------------LGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKL---DRIMATIIY-KDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKIN--EDGFDYEFEMWTRDL
3RG9 Chain:A ((27-239))
----RPFSVVVASDEKGGIGDGGTIPWEIPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKTWDSLPPKFRPLSNRLNVVLSRSATKEQLLAGIPDPIKRAEAANDVVAVNGGLEDALRMLVSKE---HTSSIETVFCIGGGTIYKQALCAPCVNVLQAIHRTVVRPASNSCSVFFDIPAAG--------TKTPEGLE-LVRESITDERVSTGAGGKKYQFEKLVPR-
General information:
TITO was launched using:
RESULT:
Template:
3RG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105661 for 1423 contacts (-74.3/contact) +
2D Compatibility (PS) -20678 + (NN) -6276 + (LL) 1100
1D Compatibility (HY) -14800 + (ID) 2900
Total energy: -149215.0 ( -104.86 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_3RG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RG9-query.scw
PDB file :
Tito_Scwrl_3RG9.pdb
: