Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AFYKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKSN
4EHD Chain:A ((29-277))
-----SGISLDNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIET-----------------------HKIPVEADFLYACSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHAKKQIPCIVSMLTKELYFYH---
General information:
TITO was launched using:
RESULT:
Template:
4EHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154361 for 1921 contacts (-80.4/contact) +
2D Compatibility (PS) -25104 + (NN) -6072 + (LL) 2156
1D Compatibility (HY) -20000 + (ID) 5100
Total energy: -208481.0 ( -108.53 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_4EHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EHD-query.scw
PDB file :
Tito_Scwrl_4EHD.pdb
: