Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGAMEEEVTLLRDKIENRQTITIGGSEIYTGQLHGVDVALLKSGIGKVAAATGATLLLERCQPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLVAAAEDCIKAL-DLNAVRGLIVSGDAFINGSVALAKIRHNFPQAIAVEMEATAIAHVCHNFKVPFVVVRAISDVADQQSHLSFEEFLAVAARQSTLMVENLVQNLARG
4KN5 Chain:A ((23-253))
MRYGVINAMAEEKAALVDAMIDEKKTTIAGKLFHHGKIGHVDVVVVESGIGKVASALTTTLLITNFGVDAVINSGSAGALGTDLRIGDIVIADYLAYADADARAFGYAYGQVPQQPARFKADTDLSNDLSESYEKVTDARLVRGLVVTSDSFIASNEQKQTILTHFPEAQSAEMEGASIAQVANYFDVPFAVVRAISDNANGEAGMTFDDFIVEAGQQSAQVLINFFEAQA--
General information:
TITO was launched using:
RESULT:
Template:
4KN5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -178121 for 1966 contacts (-90.6/contact) +
2D Compatibility (PS) -25207 + (NN) -18956 + (LL) -72
1D Compatibility (HY) -16800 + (ID) 4900
Total energy: -244056.0 ( -124.14 by residue)
QMean score : 0.650
(partial model without unconserved sides chains):
PDB file :
Tito_4KN5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KN5-query.scw
PDB file :
Tito_Scwrl_4KN5.pdb
: