Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNKPITPSTYVRCLNVGLIRKLSDFIDPQEGWKKLAVAIKKPSGDDRYNQFHIRRFEALLQTGKSPTSELLFDWGTTNCTVGDLVDLLIQNEFFAPASLLLPDAVPKTANTLPSKEAITVQQKQMPFCDKDRTLMTPVQNLEQSYMPPDSSSPENKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGE----ITPKSDIYSFGVVLLEIITG-LPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTAS |
3SKC Chain:A ((41-286)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GQRIGSGSFGTVYKGKWHGD-VAVKMLN--VTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHIIETKFEMI--KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFG----------------LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVG----------RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SKC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -84206 for 1721 contacts (-48.9/contact) +
2D Compatibility (PS) -23997 + (NN) -8011 + (LL) 13396
1D Compatibility (HY) -22000 + (ID) 4000
Total energy: -128818.0 ( -74.85 by residue)
QMean score : 0.355
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