Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSNF-CKIIYGNNDNQ-LSEKSYKSSVCNDDLFNGNEEDFVILENEKMYKTKAEFESEGYKII-------
3UP6 Chain:A ((35-358))TRAQLSIDLVNNVEQQEKINSMRFIVFGSTPGGVRLDVNEHILLSTPETATDIDAQLLEVTSSNDILVVVIANEPQSLTSQLDGIANLLTLQEMIYDISSILNSDGQIISATGMPMTGVIRDISIAPDETKTVQMVIERAVARVDVFIEAIDGGAVTGYTAGSTSVTLHNFSHDSYFVMGNVGNGTRDNADSSKNYGKVKEDVSESNLLTHSWTAATTETWAYSSAPGAENRKLLCSFYTAERLFKSDYSDRLSISMANVLKGPSDVTGITGKVIESVTKVDGTGSPTAQPFTEIRRNNVYQVTARVGKIGIQILTISVEDW


General information:
TITO was launched using:
RESULT:

Template: 3UP6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 13685 for 292 contacts (46.9/contact) +
2D Compatibility (PS) -6431 + (NN) -489 + (LL) 0
1D Compatibility (HY) 1600 + (ID) 200
Total energy: 8165.0 ( 27.96 by residue)
QMean score : 0.156

(partial model without unconserved sides chains):
PDB file : Tito_3UP6.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3UP6-query.scw
PDB file : Tito_Scwrl_3UP6.pdb: