Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELNKIAASILLSGLIIMIVSNVVDMLYNPEKYKIEHQTMVATGSNEPQKKIEQVALDIGALMQSASLEKGKSIAKKCIACHSFDKGGANKVGPNLWNIVGNKKAHLGDSFNYSKAMLEKGGKWGYEELFAFLKSPKDYIKGTRMAFAGISNPQEIADLVSYLRQLSDNQVALPK
1LFM Chain:A ((8-102))
-----------------------------------------------------------------------KTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQ-AEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS-------
General information:
TITO was launched using:
RESULT:
Template:
1LFM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32927 for 657 contacts (-50.1/contact) +
2D Compatibility (PS) -9897 + (NN) -1563 + (LL) 6628
1D Compatibility (HY) -7600 + (ID) 2000
Total energy: -47359.0 ( -72.08 by residue)
QMean score : 0.651
(partial model without unconserved sides chains):
PDB file :
Tito_1LFM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LFM-query.scw
PDB file :
Tito_Scwrl_1LFM.pdb
: