Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MWSRLVAMCCFCLLLTGVSSCSKRGVNAINKMNFVVKQMKEKRVFFDYDKSDISEAGADTLLDVMEVLQDDPNVKVTLIGHTDNRGSYEYNVALGARRADAAKNFMVSCTPYLENRIKTASKGETEPLVYVADDSKNSKYEKEHAKNRRVEFSFSGMKK
3TD5 Chain:C ((13-123))
----------------------------------------ELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQP---IADN----KTKEGRAMNRRVFATITGSR-
General information:
TITO was launched using:
RESULT:
Template:
3TD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6720 for 832 contacts (-8.1/contact) +
2D Compatibility (PS) -12431 + (NN) -10444 + (LL) 4016
1D Compatibility (HY) -800 + (ID) 1900
Total energy: -28279.0 ( -33.99 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_3TD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TD5-query.scw
PDB file :
Tito_Scwrl_3TD5.pdb
: