Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------------------------MHKYK-NIG-YVASESPKSQEVSKLLQKLNFINITEENKS----------EVDLLVVVGGDGLMLHTLHNYVVGNKDIHVY-GVNTGSVGFLMNKYFSSSEDLIDNIEHATSAQLTLLKMEAIDLSGKKY-HHVAVNEVYVFRKANQIVEMNVAINSKLKMEKFRGDGIILSTPTGSTAYNFSAGGP-ILPLNSNLFAL-TSINSYYPRHWNGALISNDTIVQI-DINNAQNRPALVV--SDYKELHNISQIKMQKDHENTVTLLFDKDYSLDERIFDRQFLY- |
| 3PFN Chain:A ((6-361)) | TTFGPKACVLQNPQTIMHIQDPASQRLTWNKSPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVE-KKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLGGDGTLLYASSLF---QGSVPPVMAFHLGSLGFLTPFSFENFQSQVTQVIEGNAAVVLRSRLKVRVV--KQAMQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDGVIVSTPTGSTAYAAAAGASMIHP---NVPAIMITPICPHSLSFRPIVVPAGVELKIMLSPEARNTAWVSFDGRKRQEIRHGDSISITTS-CYPLPSICVRDPVSDWFESLAQCLHH |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PFN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -71836 for 1906 contacts (-37.7/contact) +
2D Compatibility (PS) -27552 + (NN) -6893 + (LL) 96
1D Compatibility (HY) -8000 + (ID) 2550
Total energy: -116735.0 ( -61.25 by residue)
QMean score : 0.317
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