Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLIVANWKMNGTRSLFVNFIGKLNDKSNEITSKLVICPPFTSLP-GNIELNSNISIGAQNCHYKKSGSYTGEISAEMLKELGCTYVILGHSERTH---ETNGEIKLKSETAIESGLHPIICVGENLEDRESSKTKEVVEYQCKS---RLPIHGEYTVAYEPIWAIGTGHVPSNNAIAEVIEVIQSYTSKKHV----------IYGGSVSLENIENLSNILNLSGVLIGSASLDFDRFHKIVQQVEKAY
1SW3 Chain:B ((6-236))
--FFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKVATPQQAQEVHEKLRGWL-KSHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKPEFVDIINAKH----
General information:
TITO was launched using:
RESULT:
Template:
1SW3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112363 for 1717 contacts (-65.4/contact) +
2D Compatibility (PS) -23249 + (NN) -9954 + (LL) 232
1D Compatibility (HY) -14800 + (ID) 4300
Total energy: -164434.0 ( -95.77 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_1SW3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SW3-query.scw
PDB file :
Tito_Scwrl_1SW3.pdb
: