Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHSPIISISNLHLSFNDKIILNDISLDILKGESLVILGSSGSGKSVLTKTIIGLLAPDSGSIKIN-----------SKSKNKFGVLFQNSALFDYVAVWENISFNYRKRFNISKKEAKQLAIEKLNDVGLEKNIADMFPIELSGGMKKRVALARAIAHNPEIIMLDEPTSGLDPIMSDIVKETIVKLSKDPSPTIITITHDIHDAFKIADKIAVLYEGSIISHGTVQEI-KNTKNEYIKKFIRYVGTK
3C4J Chain:B ((24-262))
----MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGL-KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFLSKVF--
General information:
TITO was launched using:
RESULT:
Template:
3C4J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148728 for 1880 contacts (-79.1/contact) +
2D Compatibility (PS) -24668 + (NN) -13122 + (LL) -72
1D Compatibility (HY) -16000 + (ID) 3950
Total energy: -206540.0 ( -109.86 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_3C4J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C4J-query.scw
PDB file :
Tito_Scwrl_3C4J.pdb
: