Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYG----EELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKF-EGVYLEVDNKNEEAVAYYKEQGFTILRSYQ--------PEMYGEKLDLALMYKAF
1MK4 Chain:A ((1-156))
-MDIRTITSSDYEMVTSVLNEWWGGRQ---LKEK-L----PR-----LFFEHFQD-TSFITSEHNSMTGFLIGFQSQSDPETAYIHFSGVHPDFRKMQIGKQLYDVFIETVKQRGCTRVKCVTSPVNKVSIAYHTKLGFDIEKGTKTVNGISVFANYDGPGQDRVLFVKNI
General information:
TITO was launched using:
RESULT:
Template:
1MK4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74697 for 993 contacts (-75.2/contact) +
2D Compatibility (PS) -14986 + (NN) -177 + (LL) 1128
1D Compatibility (HY) -5600 + (ID) 1350
Total energy: -95682.0 ( -96.36 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_1MK4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MK4-query.scw
PDB file :
Tito_Scwrl_1MK4.pdb
: