Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
4F8M Chain:A ((7-135))
-------------------------------------------------------------------------------------LHKEPATLIKAIDGDTIKLMYKGQPMTFRLLLVDTPEFN------EKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYVYADGKMVNEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWS--------
General information:
TITO was launched using:
RESULT:
Template:
4F8M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52795 for 1028 contacts (-51.4/contact) +
2D Compatibility (PS) -13869 + (NN) -4173 + (LL) 6020
1D Compatibility (HY) -16000 + (ID) 6100
Total energy: -86917.0 ( -84.55 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_4F8M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F8M-query.scw
PDB file :
Tito_Scwrl_4F8M.pdb
: