Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIVNKVIIV-----EGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKR-----YLSESEHIFIDKTYCQVANCPKQYLAHVLSKHG-----FTCKKETPLLPNINNERLVLVNE--------------------------
1S3L Chain:A ((26-190))
----MKIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKDINEENIIDDFISVEIDDLKFFITHGHHQSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPGECCGYLTGIPTIGILDTEKKEYREIVL
General information:
TITO was launched using:
RESULT:
Template:
1S3L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58963 for 863 contacts (-68.3/contact) +
2D Compatibility (PS) -13838 + (NN) -4451 + (LL) 748
1D Compatibility (HY) -6000 + (ID) 900
Total energy: -83404.0 ( -96.64 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_1S3L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S3L-query.scw
PDB file :
Tito_Scwrl_1S3L.pdb
: