Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLYEGKAKRIFSTNQENELRVEYKDEVTAGNGAKKDTMAGKGRLNNQITSIIFKYLQENGIESHFIKQLSETEQLVKPVKIIPLEVVVRNIASGSITKRLGFENGEVFREPLVEFFYKNDALNDPLITDDHVKLLNIASDEDIEILKSKALKINNVLKQLMDAMNLKLVDFKIEFGKTETGQILLADEISPDTCRIWDKATNANFDKDVYRNNTGSLIETYQIFLNKLEDLK
3U55 Chain:A ((12-235))
--------AKKMIPID-DDKLIMEFKDDATAFDGTKKARFKGKGWLNAQLSVIFFKLLEEHGIKTHFIGVAGGNRLIVEKLDMYPLEVVVRNVVAGSLKKRLPLPEGYELPEPIVELYYKNDELHDPMINYYHAKVLGI-SLDEIKKIEEIALKVNEILKDYLAKKGIILVDFKLEFGKDKNGDIVLADEISPDTCRFWDAKTKRSLDKDVFRFDKGDLIEAYKEIYERITGEK
General information:
TITO was launched using:
RESULT:
Template:
3U55.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64225 for 1721 contacts (-37.3/contact) +
2D Compatibility (PS) -24208 + (NN) -6137 + (LL) 964
1D Compatibility (HY) -25200 + (ID) 5050
Total energy: -123856.0 ( -71.97 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_3U55.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U55-query.scw
PDB file :
Tito_Scwrl_3U55.pdb
: