Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKLINKKNTINNYNEELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGLSEE
2VG3 Chain:D ((40-282))
--------QHTSKAAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFG-----
General information:
TITO was launched using:
RESULT:
Template:
2VG3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103618 for 1936 contacts (-53.5/contact) +
2D Compatibility (PS) -25806 + (NN) -8076 + (LL) 1016
1D Compatibility (HY) -16800 + (ID) 4700
Total energy: -157984.0 ( -81.60 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_2VG3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VG3-query.scw
PDB file :
Tito_Scwrl_2VG3.pdb
: