Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------------------------------MYNYHLLEDRDVLCIDQKSFFASVSCIEKGLDPLETKLA---VVADTKRQGSVILAATPKLKELGIKTGSRLFEI----PHRNDIYIINPSMRKYLNVSVAISKIALRYIPPEDLHQYSIDEFFMDVTDSYHRFSSTVHAFCERLKREIYEET-GIYCTVGIGSNMLLSKIAMDVEAKHSQNGIAEWRYQDVPTKLWPIQPLRDFWGINRRTEAKLNK--RGIFTIGDLAK-YPYKFLKKEFGI-LGVDMHLHANGIDQSKVREKHKISNPSICKSQILMRDYH------FDEAKVVMQELIEDVASRVRARKKVARTIHFAFGYSDEG---------------GVHKQYTLKDPTNLEKDIYKVVMHFADKLCNKQALYRTLSISLSQFINEDERQLSLFEDEYQRKRDECLAKTIDQLHLKYGKGIVSKAVSFTEAGTKHGRLGLMAGHKM |
| 2AQ4 Chain:A ((1-434)) | KRIVACDDPDFLTSYFAHSRLHHLSAWKANLKDKFLNENIHKYTKITDKDTYIIFHIDFDCFFATVAYLCRSSSFSACDFKRDPIVVCHGTKNSDIASCNYVARSYGIKNGMWVSQAEKMLPNGIKLISLPYTFEQFQLKSEAFYSTLKRLNIFNLILPISIDEAVCVRIIPD----TLNARLCEEIRQEIFQGTNGCTVSIGCSDSLVLARLALKMAKP---NGYNITFKSNLSEEFWSSFKLDDLPGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVGSKLGMKIHLALQGQDDEESLKILYDPKEVLQRKSLSIDINWGIRFKNITQVDLFIERGCQYLLEKLNEINKTTSQITLKLMRRCKDAPIEPPKYMGMGRCDSFSRSSRLGIPTNEFGIIATEMKSLYRTLGCPPMELRGLALQFNKLVDV------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2AQ4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -162661 for 2602 contacts (-62.5/contact) +
2D Compatibility (PS) -37703 + (NN) -16996 + (LL) 4500
1D Compatibility (HY) -16000 + (ID) 3050
Total energy: -231910.0 ( -89.13 by residue)
QMean score : 0.408
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