Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MTKLFIPYIM----GNKDLIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITIDYIFNQLEKHGDQ-IKCNYVLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRLKQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVTMNATTGQNGAFHPELKRKIESIKAIANVPVVAGFGIRTPQHVADIKEV-ADGIVIGSEIVKRFKS-NTREEIIRYLQSIQQTLNN-
1GEQ Chain:A ((1-248))
MFK-DGSLIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHS-STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLY-----E--IPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEK--GREATEFLKKKVEELLGI
General information:
TITO was launched using:
RESULT:
Template:
1GEQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -189247 for 1880 contacts (-100.7/contact) +
2D Compatibility (PS) -25717 + (NN) -10377 + (LL) 380
1D Compatibility (HY) -12800 + (ID) 3500
Total energy: -241261.0 ( -128.33 by residue)
QMean score : 0.749
(partial model without unconserved sides chains):
PDB file :
Tito_1GEQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GEQ-query.scw
PDB file :
Tito_Scwrl_1GEQ.pdb
: