Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVVVQRVKEA--SVTNDTLN---------NQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNKLNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAY--GLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ
3KOC Chain:C ((1-159))
MRVVIQRVKGAILSVRKENIGENEKELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD----
General information:
TITO was launched using:
RESULT:
Template:
3KOC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54317 for 1024 contacts (-53.0/contact) +
2D Compatibility (PS) -16313 + (NN) -8450 + (LL) 216
1D Compatibility (HY) -15200 + (ID) 3050
Total energy: -97114.0 ( -94.84 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_3KOC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KOC-query.scw
PDB file :
Tito_Scwrl_3KOC.pdb
: