Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKMINKLIVPVTASALLLGACGASATDSKENTLISSKAGDVTVADTMKKIGKD----------------QIANASFTEMLNKILADK---YKNKVNDKKIDEQIEKMQKQYG-GKDKFEKALQQQGLTADKYKENLRTAAYHKELL----SDKIKISDSEIKEDSK-----KASHILIKVKSKKSDK---------------------------------------------------------------------------------------------------------EGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHIIKADKPTD--FNSEKQSLKEKLVDQKVQKNPKLLTDAYKDLLKEYDVDFKDRDIKSVVEDKILNPEKLKQGGAQGGQSGMSQ |
1M5Y Chain:A ((25-427)) | ----------------------------VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVD------RAYRMLMNRKFS-E--EAASWMQEQRASAYVKILS------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1M5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 25500 for 1444 contacts (17.7/contact) +
2D Compatibility (PS) -27739 + (NN) -13710 + (LL) 3720
1D Compatibility (HY) -10400 + (ID) 2900
Total energy: -25529.0 ( -17.68 by residue)
QMean score : 0.573
|
|
|