Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKMINKLIVPVTASALLLGACGASATDSKENTLISSKAGDVTVADTMKKIGKD----------------QIANASFTEMLNKILADK---YKNKVNDKKIDEQIEKMQKQYG-GKDKFEKALQQQGLTADKYKENLRTAAYHKELL----SDKIKISDSEIKEDSK-----KASHILIKVKSKKSDK---------------------------------------------------------------------------------------------------------EGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHIIKADKPTD--FNSEKQSLKEKLVDQKVQKNPKLLTDAYKDLLKEYDVDFKDRDIKSVVEDKILNPEKLKQGGAQGGQSGMSQ
1M5Y Chain:A ((25-427))----------------------------VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVD------RAYRMLMNRKFS-E--EAASWMQEQRASAYVKILS-------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1M5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 25500 for 1444 contacts (17.7/contact) +
2D Compatibility (PS) -27739 + (NN) -13710 + (LL) 3720
1D Compatibility (HY) -10400 + (ID) 2900
Total energy: -25529.0 ( -17.68 by residue)
QMean score : 0.573

(partial model without unconserved sides chains):
PDB file : Tito_1M5Y.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1M5Y-query.scw
PDB file : Tito_Scwrl_1M5Y.pdb: