Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
1R1T Chain:A ((33-118))
------------AQSLAEFFAVLADPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQNALDHL--------
General information:
TITO was launched using:
RESULT:
Template:
1R1T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45679 for 546 contacts (-83.7/contact) +
2D Compatibility (PS) -9067 + (NN) -3768 + (LL) 692
1D Compatibility (HY) -8800 + (ID) 1550
Total energy: -68172.0 ( -124.86 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_1R1T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R1T-query.scw
PDB file :
Tito_Scwrl_1R1T.pdb
: